LCA applied in Masters category and H1B as Bachelors category

[nareannl]

The H1b filing worker in my company has filed LCA under masters degree category by mistake. Since there is no time to change LCA, Company is filing H1b with that LCA. Here the field "Is the beneficiary an h-1b nonimmigrant exempt from the dept. of labor attestation requirements" in I-129 is marked as YES. But the candidate is not eligible for exemption under either Masters degree or with Salary above 60K per annum. Will USCIS accept this application and raise query or they will reject the application? Your valuable comments are highly appreciated.